3OAZ

A non-self sugar mimic of the HIV glycan shield shows enhanced antigenicity


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 3OAZ

Classification: IMMUNE SYSTEM

Total Structure Weight: 96166.94

Macromolecule Entities
Molecule Chains Length Organism Details
Fab 2G12, heavy chain H, M 223 Homo sapiens Fragment: Fab
Fab 2G12, light chain K, L 213 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2M5
Query on 2M5

H, M methyl 7-deoxy-L-glycero-alpha-D-manno-heptopyranoside
C8 H16 O6
PNWOVLBMFHSUMR-IHKZFYOVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H, K, L, M GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

H, K, L, M CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.176
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 72.62 α = 90.00
b = 72.09 β = 95.78
c = 84.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-06
  • Released Date: 2011-01-12
  • Deposition author(s): Doores, K.J., Fulton, Z., Hong, V., Patel, M.K., Scanlan, C.N., Wormald, M.R., Finn, M.G., Burton, D.R., Wilson, I.A., Davis, B.G

Revision History

  • Version 1_0: 2011-01-12

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance