3OAU

Antibody 2G12 Recognizes Di-Mannose Equivalently in Domain- and Non-Domain-Exchanged Forms, but only binds the HIV-1 Glycan Shield if Domain-Exchanged


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 3OAU

Classification: IMMUNE SYSTEM

Total Structure Weight: 47752.20

Macromolecule Entities
Molecule Chains Length Organism Details
Fab 2G12, heavy chain H 225 Homo sapiens Fragment: Fab
Fab 2G12, light chain L 212 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAN
Query on MAN

H ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.212
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 39.30 α = 92.91
b = 56.63 β = 105.05
c = 57.65 γ = 92.74

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-05
  • Released Date: 2011-01-12
  • Deposition author(s): Doores, K.J., Fulton, Z., Huber, M., Wilson, I.A., Burton, D.R.

Revision History

  • 2011-07-13
    Type: Version format compliance