3O2G

Crystal Structure of Human gamma-butyrobetaine,2-oxoglutarate dioxygenase 1 (BBOX1)

Structural Biology Knowledgebase: 3O2G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.176
  • R-Value Work: 0.147

Literature

Macromolecules
Sequence Display for 3O2G

Classification: OXIDOREDUCTASE

Total Structure Weight: 45596.80

Macromolecule Entities
Molecule Chains Length Organism Details
Gamma-butyrobetaine dioxygenase A 388 Homo sapiens EC#: 1.14.11.1 IUBMB
Gene Name(s): BBOX1 Gene View BBH BBOX
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OGA
Query on OGA

A N-OXALYLGLYCINE
C4 H5 N O5
BIMZLRFONYSTPT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NM2
Query on NM2

A 3-CARBOXY-N,N,N-TRIMETHYLPROPAN-1-AMINIUM
C7 H16 N O2
JHPNVNIEXXLNTR-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.176
  • R-Value Work: 0.147
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.39 α = 90.00
b = 107.39 β = 90.00
c = 204.92 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-22
  • Released Date: 2010-09-15
  • Deposition author(s): Krojer, T., Kochan, G., McDonough, M.A., von Delft, F., Leung, I.K.H., Henry, L., Claridge, T.D.W., Pilka, E., Ugochukwu, E., Muniz, J., Filippakopoulos, P., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Kavanagh, K.L., Schofield, C.J., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4