3O0G

Crystal Structure of Cdk5:p25 in complex with an ATP analogue

Structural Biology Knowledgebase: 3O0G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3O0G

Classification: TRANSFERASE / TRANSFERASE ACTIVATOR

Total Structure Weight: 101508.21

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 5 A, B 292 Homo sapiens EC#: 2.7.11.1 IUBMB 3.2.1.21 IUBMB
Mutation: D144N
Gene Name(s): CDK5 Gene View CDKN5
Cyclin-dependent kinase 5 activator 1 D, E 149 Homo sapiens Fragment: UNP residues 146-293
Gene Name(s): CDK5R1 Gene View CDK5R NCK5A

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3O0
Query on 3O0

B {4-amino-2-[(4-chlorophenyl)amino]-1,3-thiazol- 5-yl}(3-nitrophenyl)methanone
C16 H11 Cl N4 O3 S
YQRVBHMYUSGXHL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3O0 IC50: 750 - 2000 nM (99) BindingDB

IC50: 2000 nM  BindingMOAD
Ki: 600 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.226
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.12 α = 90.00
b = 117.12 β = 90.00
c = 155.60 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-19
  • Released Date: 2011-01-26
  • Deposition author(s): Mapelli, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4