3NY9

Crystal structure of the human beta2 adrenergic receptor in complex with a novel inverse agonist

Structural Biology Knowledgebase: 3NY9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 3NY9

Classification: MEMBRANE PROTEIN

Total Structure Weight: 57423.80

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-2 adrenergic receptor, Lysozyme A 490 Homo sapiens Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Fragment: Chimeric protein of Beta-2 Adrenoreceptor 1-230, Lysozyme 2-161, Beta-2 adrenergic receptor 263-348
Mutation: G16R, E27Q, E122W, N187E, C1054T, C1097A
Gene Name(s): E ADRB2 Gene View ADRB2R B2AR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: β2 adrenergic receptor


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CLR
Query on CLR

A CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLC
Query on OLC

A (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
JSZ
Query on JSZ

A ethyl 4-({(2S)-2-hydroxy-3-[(1-methylethyl)amino]propyl}oxy)- 3-methyl-1-benzofuran-2-carboxylate
C18 H25 N O5
QVJVMNUTCGTBCH-ZDUSSCGKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.219
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.58 α = 90.00
b = 75.90 β = 90.00
c = 174.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-14
  • Released Date: 2010-08-11
  • Deposition author(s): Fenalti, G., Wacker, D., Brown, M.A., Katritch, V., Abagyan, R., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

Revision History

  • 2012-08-08
    Type: Other | Details: related entry
  • 2012-05-23
    Type: Sequence database correspondence | Details: fix incorrect UniProt ID, GG
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4