3NY8

Crystal structure of the human beta2 adrenergic receptor in complex with the inverse agonist ICI 118,551


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 3NY8

Classification: MEMBRANE PROTEIN

Total Structure Weight: 58154.35

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-2 adrenergic receptor, Lysozyme A 490 Homo sapiens Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Fragment: Chimeric protein of Beta-2 Adrenoreceptor 1-230, Lysozyme 2-161, Beta-2 adrenergic receptor 263-348
Mutation: G16R, E27Q, E122W, N187E, C1054T, C1097A
Gene Name(s): E ADRB2 Gene View ADRB2R B2AR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: β2 adrenergic receptor


Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CLR
Query on CLR

A CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLC
Query on OLC

A (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLA
Query on OLA

A OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
JRZ
Query on JRZ

A (2S,3S)-1-[(7-methyl-2,3-dihydro-1H-inden- 4-yl)oxy]-3-[(1-methylethyl)amino]butan-2- ol
C17 H27 N O2
VFIDUCMKNJIJTO-XJKSGUPXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.226
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 40.71 α = 90.00
b = 76.15 β = 90.00
c = 174.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-14
  • Released Date: 2010-08-11
  • Deposition author(s): Wacker, D., Fenalti, G., Brown, M.A., Katritch, V., Abagyan, R., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2012-05-23
    Type: Database references
  • 2012-08-08
    Type: Other
  • 2017-08-02
    Type: Refinement description, Source and taxonomy