3N5N

Crystal structure analysis of the catalytic domain and interdomain connector of human MutY homologue

Structural Biology Knowledgebase: 3N5N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3N5N

Classification: HYDROLASE

Total Structure Weight: 64272.38

Macromolecule Entities
Molecule Chains Length Organism Details
A/G-specific adenine DNA glycosylase X, Y 287 Homo sapiens EC#: 3.2.2 IUBMB
Fragment: Catalytic domain, UNP residues 76-362
Gene Name(s): MUTYH Gene View MYH

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SF4
Query on SF4

X, Y IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

Y ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.206
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.31 α = 90.00
b = 82.17 β = 100.90
c = 63.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-25
  • Released Date: 2010-11-10
  • Deposition author(s): Toth, E.A., Luncsford, P.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4