3LQ8

Structure of the kinase domain of c-Met bound to XL880 (GSK1363089)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 3LQ8

Classification: TRANSFERASE

Total Structure Weight: 34834.27

Macromolecule Entities
Molecule Chains Length Organism Details
Hepatocyte growth factor receptor A 302 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: tyrosine kinase domain
Gene Name(s): MET Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
88Z
Query on 88Z

A N-(3-fluoro-4-{[6-methoxy-7-(3-morpholin- 4-ylpropoxy)quinolin-4-yl]oxy}phenyl)-N'- (4-fluorophenyl)cyclopropane-1,1-dicarboxamide
C34 H34 F2 N4 O6
CXQHYVUVSFXTMY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
88Z IC50: 0.4 - 14 nM (99) BindingDB

IC50: 0.4 nM  BindingMOAD
IC50: 0.4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.191
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 37.92 α = 90.00
b = 43.02 β = 91.61
c = 89.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-02-08
  • Released Date: 2010-05-19
  • Deposition author(s): Lougheed, J.C., Stout, T.J.

Revision History

  • Version 1_0: 2010-05-19

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance