3L3M

PARP complexed with A927929


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 3L3M

Classification: TRANSFERASE

Total Structure Weight: 39507.19

Macromolecule Entities
Molecule Chains Length Organism Details
Poly [ADP-ribose] polymerase 1 A 350 Homo sapiens EC#: 2.4.2.30 IUBMB
Fragment: residues 662-1011
Mutation: V101A
Gene Name(s): PARP1 Gene View ADPRT PPOL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A92
Query on A92

A 2-{2-fluoro-4-[(2S)-piperidin-2-yl]phenyl}- 1H-benzimidazole-7-carboxamide
C19 H19 F N4 O
LGVIXHMVSRYWJL-HNNXBMFYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
A92 N/A in BindingDB
Ki: 6 nM  BindingMOAD
Ki: 6 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.202
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 94.21 α = 90.00
b = 94.21 β = 90.00
c = 68.86 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-17
  • Released Date: 2010-06-23
  • Deposition author(s): Park, C.H.

Revision History

  • Version 1_0: 2010-06-23

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance