3KN5

Crystal structure of the C-terminal kinase domain of msk1 in complex with AMP-PNP

Structural Biology Knowledgebase: 3KN5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3KN5

Classification: TRANSFERASE

Total Structure Weight: 75024.02

Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal protein S6 kinase alpha-5 A, B 325 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: residues 414-738
Gene Name(s): RPS6KA5 Gene View MSK1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.208
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.56 α = 90.00
b = 91.25 β = 90.00
c = 135.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-12
  • Released Date: 2010-04-21
  • Deposition author(s): D'Angelo, I., Malakhova, M., Dong, Z.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4