3KMW

Crystal structure of the ILK/alpha-parvin core complex (MgATP)

Structural Biology Knowledgebase: 3KMW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3KMW

Classification: CELL ADHESION

Total Structure Weight: 46346.91

Macromolecule Entities
Molecule Chains Length Organism Details
Integrin-linked kinase A 271 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: C-terminal pseudokinase domain: UNP residues 183-452
Mutation: C346S, C422S
Gene Name(s): ILK Gene View ILK1 ILK2
Alpha-parvin B 129 Homo sapiens Fragment: C-terminal calponin homology domain: UNP residues 248-372
Gene Name(s): PARVA Gene View MXRA2

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.199
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.13 α = 90.00
b = 117.10 β = 101.96
c = 47.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-11
  • Released Date: 2009-12-29
  • Deposition author(s): Fukuda, K., Qin, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4