3JC9

Architectural model of the type IVa pilus machine in a non-piliated state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Aggregation State: Particle

Literature

Macromolecules
Sequence Display for 3JC9

Classification: MOTOR PROTEIN

Total Structure Weight: 3172336.25

Macromolecule Entities
Molecule Chains Length Organism Details
PilA Aa, Ab, Ac, Ad, Ae 158 Myxococcus xanthus
PilC Ca, Cb 417 Myxococcus xanthus Gene Name(s): pilC MXAN_5786
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PilN Na, Nb, Nc..., Nd, Ne, Nf, Ng, Nh, Ni, Nj, Nk, NlNa, Nb, Nc, Nd, Ne, Nf, Ng, Nh, Ni, Nj, Nk, Nl 225 Myxococcus xanthus Gene Name(s): pilN MXAN_5775
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PilO Oa, Ob, Oc..., Od, Oe, Of, Og, Oh, Oi, Oj, Ok, OlOa, Ob, Oc, Od, Oe, Of, Og, Oh, Oi, Oj, Ok, Ol 205 Myxococcus xanthus Gene Name(s): pilO MXAN_5774
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PilM Ma, Mb, Mc..., Md, Me, Mf, Mg, Mh, Mi, Mj, Mk, MlMa, Mb, Mc, Md, Me, Mf, Mg, Mh, Mi, Mj, Mk, Ml 395 Myxococcus xanthus Gene Name(s): pilM MXAN_5776
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PilQ Qa, Qb, Qc..., Qd, Qe, Qf, Qg, Qh, Qi, Qj, Qk, QlQa, Qb, Qc, Qd, Qe, Qf, Qg, Qh, Qi, Qj, Qk, Ql 901 Myxococcus xanthus Gene Name(s): pilQ
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PilP Pa, Pb, Pc..., Pd, Pe, Pf, Pg, Ph, Pi, Pj, Pk, PlPa, Pb, Pc, Pd, Pe, Pf, Pg, Ph, Pi, Pj, Pk, Pl 172 Myxococcus xanthus Gene Name(s): pilP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TsaP Ta, Tb, Tc..., Td, Te, Tf, Tg, Th, Ti, Tj, Tk, TlTa, Tb, Tc, Td, Te, Tf, Tg, Th, Ti, Tj, Tk, Tl 411 Myxococcus xanthus Gene Name(s): MXAN_3001
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

Ma, Mb, Mc, Md, Me, Mf, Mg, Mh, Mi, Mj, Mk, Ml ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

Ma, Mb, Mc, Md, Me, Mf, Mg, Mh, Mi, Mj, Mk, Ml MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MEA
Query on MEA
Aa, Ab, Ac, Ad, Ae L-PEPTIDE LINKING C10 H13 N O2 PHE

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-11-24
  • Released Date: 2016-03-16
  • Deposition author(s): Chang, Y.-W., Rettberg, L.A., Jensen, G.J.

Revision History

  • 2016-03-23
    Type: Database references