3J0L

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Structural Biology Knowledgebase: 3J0L SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.8 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3J0L

Classification: RIBOSOME

Total Structure Weight: 387893.75


Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal protein S5 T 192 Oryctolagus cuniculus
Ribosomal protein S14 K 140 Oryctolagus cuniculus
Ribosomal protein S23 L 141 Oryctolagus cuniculus
Ribosomal protein S30 X 68 Oryctolagus cuniculus
Ribosomal protein S15 S 125 Oryctolagus cuniculus
Ribosomal protein L10a B 213 Oryctolagus cuniculus
Ribosomal protein L10 J 219 Oryctolagus cuniculus
Ribosomal protein L36a F 95 Oryctolagus cuniculus
Macromolecule Entities
Molecule Chains Length Organism Details
40S ribosomal RNA fragment a 48 Oryctolagus cuniculus
40S ribosomal RNA fragment b 12 Oryctolagus cuniculus
40S ribosomal RNA fragment c 17 Oryctolagus cuniculus
40S ribosomal RNA fragment d 7 Oryctolagus cuniculus
40S ribosomal RNA fragment e 4 Oryctolagus cuniculus
40S ribosomal RNA fragment E 5 Oryctolagus cuniculus
40S ribosomal RNA fragment f 21 Oryctolagus cuniculus
40S ribosomal RNA fragment g 31 Oryctolagus cuniculus
40S ribosomal RNA fragment G 13 Oryctolagus cuniculus
40S ribosomal RNA fragment h 111 Oryctolagus cuniculus
60S ribosomal RNA fragment 1 50 Oryctolagus cuniculus
60S ribosomal RNA fragment 2 112 Oryctolagus cuniculus
60S ribosomal RNA fragment 3 12 Oryctolagus cuniculus
60S ribosomal RNA fragment 4 14 Oryctolagus cuniculus
60S ribosomal RNA fragment 5 6 Oryctolagus cuniculus
60S ribosomal RNA fragment 6 19 Oryctolagus cuniculus
60S ribosomal RNA fragment 7 50 Oryctolagus cuniculus
60S ribosomal RNA fragment 8 20 Oryctolagus cuniculus
tRNA V, W, Y 76 Oryctolagus cuniculus
mRNA fragment v, y 3 Oryctolagus cuniculus
mRNA fragment w 2 Oryctolagus cuniculus


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.8 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-04
  • Released Date: 2011-11-16
  • Deposition author(s): Budkevich, T., Giesebrecht, J., Altman, R., Munro, J., Mielke, T., Nierhaus, K., Blanchard, S., Spahn, C.M.

Revision History

No revisions since initial release