3INL

Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, ALDH2*2, complexed with agonist Alda-1

Structural Biology Knowledgebase: 3INL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.136

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3INL

Classification: OXIDOREDUCTASE

Total Structure Weight: 440574.91

Macromolecule Entities
Molecule Chains Length Organism Details
Aldehyde dehydrogenase, mitochondrial A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 500 Homo sapiens EC#: 1.2.1.3 IUBMB
Mutation: C302S, E487K
Gene Name(s): ALDH2 Gene View ALDM
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BXB
Query on BXB

A, B, C, D, E, F, G, H N-(1,3-benzodioxol-5-ylmethyl)-2,6-dichlorobenzamide
C15 H11 Cl2 N O3
NMKJFZCBCIUYHI-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D, E, F, G, H 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D, E, F, G, H SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.136
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 102.12 α = 90.00
b = 176.90 β = 94.57
c = 102.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-08-12
  • Released Date: 2010-01-12
  • Deposition author(s): Perez-Miller, S., Hurley, T.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4