3IJJ

Ternary Complex of Macrophage Migration Inhibitory Factor (MIF) Bound Both to 4-hydroxyphenylpyruvate and to the Allosteric Inhibitor AV1013 (R-stereoisomer)

Structural Biology Knowledgebase: 3IJJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3IJJ

Classification: ISOMERASE

Total Structure Weight: 38661.33

Macromolecule Entities
Molecule Chains Length Organism Details
Macrophage migration inhibitory factor A, B, C 114 Homo sapiens EC#: 5.3.2.1 IUBMB
Gene Name(s): MIF Gene View GLIF MMIF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AVR
Query on AVR

C (2R)-2-amino-1-[2-(1-methylethyl)pyrazolo[1,5- a]pyridin-3-yl]propan-1-one
5-a]pyridin- 3-yl)propan-1-one, (Synonym)
C13 H17 N3 O
JLKPIOQFGACSJO-SECBINFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EN1
Query on EN1

A, B, C (2E)-2-hydroxy-3-(4-hydroxyphenyl)prop-2- enoic acid
C9 H8 O4
GQYBCIHRWMPOOF-VMPITWQZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ENO
Query on ENO

A, B, C 3-(4-HYDROXY-PHENYL)PYRUVIC ACID
HPP (Synonym)
C9 H8 O4
KKADPXVIOXHVKN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.162
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.24 α = 90.00
b = 67.91 β = 90.00
c = 87.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-08-04
  • Released Date: 2010-06-16
  • Deposition author(s): Crichlow, G.V., Cho, Y., Lolis, E.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4