3IFW

Crystal structure of the S18Y variant of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester.

Structural Biology Knowledgebase: 3IFW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3IFW

Classification: hydrolase / hydrolase inhibitor

Total Structure Weight: 33980.08

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin carboxyl-terminal hydrolase isozyme L1 A 228 Homo sapiens EC#: 3.4.19.12 IUBMB 6 IUBMB
Mutation: S18Y
Gene Name(s): UCHL1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin B 75 Homo sapiens Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GVE
Query on GVE

B METHYL 4-AMINOBUTANOATE
C5 H11 N O2
KVQGGLZHHFGHPU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.209
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.30 α = 90.00
b = 87.30 β = 90.00
c = 193.54 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-26
  • Released Date: 2010-06-16
  • Deposition author(s): Das, C., Boudreaux, D., Maiti, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4