Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
Ishikawa, H., Nakagawa, N., Kuramitsu, S., Masui, R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribonuclease TTHA0252 | 431 | Thermus thermophilus HB8 | Mutation(s): 0  Gene Names: TTHA0252 EC: 3.1 | ||
UniProt | |||||
Find proteins for Q5SLP1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLP1  Go to UniProtKB:  Q5SLP1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5SLP1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
U5P Query on U5P | KD [auth D] LA [auth A] MA [auth A] NA [auth A] OB [auth B] | URIDINE-5'-MONOPHOSPHATE C9 H13 N2 O9 P DJJCXFVJDGTHFX-XVFCMESISA-N | |||
FLC Query on FLC | KA [auth A], NB [auth B] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K | |||
SO4 Query on SO4 | AA [auth A] AB [auth B] AC [auth C] AD [auth D] BA [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
ZN Query on ZN | LD [auth D] MD [auth D] OA [auth A] PA [auth A] QB [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 145.238 | α = 90 |
b = 146.677 | β = 110.11 |
c = 120.349 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
XFIT | data reduction |