3I83

Crystal structure of 2-dehydropantoate 2-reductase from Methylococcus capsulatus

Structural Biology Knowledgebase: 3I83 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 3I83

Classification: OXIDOREDUCTASE

Total Structure Weight: 68963.43

Macromolecule Entities
Molecule Chains Length Organism Details
2-dehydropantoate 2-reductase A, B 320 Methylococcus capsulatus EC#: 1.1.1.169 IUBMB
Gene Name(s): panE MCA2523
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACY
Query on ACY

A ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.192
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 75.85 α = 90.00
b = 79.18 β = 90.00
c = 100.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-09
  • Released Date: 2009-07-21
  • Deposition author(s): Bonanno, J.B., Gilmore, M., Bain, K.T., Chang, S., Sampathkumar, P., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor