3HOT

Crystal structure of the Mos1 mariner paired end complex with Mn

Structural Biology Knowledgebase: 3HOT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.304
  • R-Value Work: 0.248

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3HOT

Classification: TRANSFERASE DNA BINDING PROTEIN / DNA

Total Structure Weight: 131216.28


Macromolecule Entities
Molecule Chains Length Organism Details
Transposable element mariner, complete cds A, B 345 Drosophila mauritiana EC#: 3.1 IUBMB
Mutation: K45T, S164N, R210P, T216A, L344F
Gene Name(s): mariner\T
Macromolecule Entities
Molecule Chains Length Organism Details
Mos1 NTS inverted repeat DNA C, E, G 25 synthetic
Mos1 TS inverted repeat DNA D, F, H 28 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5IU
Query on 5IU
C, E, G DNA LINKING C9 H12 I N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.304
  • R-Value Work: 0.248
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 120.29 α = 90.00
b = 84.99 β = 99.21
c = 132.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-03
  • Released Date: 2009-09-22
  • Deposition author(s): Richardson, J.M., Walkinshaw, M.D.

Revision History

  • 2013-10-16
    Type: Biological assembly | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor