Download MendeleySurfactant Poloxamer 188 as a New Crystallizing Agent for Urate Oxidase
Giffard, M., Delfosse, V., Sciara, G., Mayer, C., Cambillau, C., El Hajji, M., Castro, B., Bonnete, F.(2009) Cryst Growth Des 9: 4199-4206
3GKO
Crystal structure of urate oxydase using surfactant Poloxamer 188 as a New Crystallizing Agent
- PDB DOI: https://doi.org/10.2210/pdb3GKO/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Aspergillus flavus
- Expression System: Saccharomyces cerevisiae
- Mutation(s): No
- Deposited: 2009-03-11 Released: 2010-02-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.199
- R-Value Work: 0.179
- R-Value Observed: 0.179
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uricase | 301 | Aspergillus flavus | Mutation(s): 0 EC: 1.7.3.3 |  | |
UniProt | |||||
Find proteins for Q00511 (Aspergillus flavus) Explore Q00511 Go to UniProtKB: Q00511 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q00511 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AZA Query on AZA | B [auth A] | 8-AZAXANTHINE C4 H3 N5 O2 KVGVQTOQSNJTJI-UHFFFAOYSA-N |  | ||
| K Query on K | C [auth A], D [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SAC Query on SAC | A | L-PEPTIDE LINKING | C5 H9 N O4 |  | SER |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.199
- R-Value Work: 0.179
- R-Value Observed: 0.179
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 80.063 | α = 90 |
| b = 95.284 | β = 90 |
| c = 104.534 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| AMoRE | phasing |
| CNS | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2010-02-23 Deposition Author(s): Delfosse, V., Giffard, M., Sciara, G., Bonnete, F., Mayer, C.
Revision History (Full details and data files)
- Version 1.0: 2010-02-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
