3GIZ

Crystal structure of the Fab fragment of anti-CD20 antibody Ofatumumab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 3GIZ

Classification: IMMUNE SYSTEM

Total Structure Weight: 47088.48

Macromolecule Entities
Molecule Chains Length Organism Details
Fab fragment of anti-CD20 antibody Ofatumumab, light chain L 211 Homo sapiens
Fab fragment of anti-CD20 antibody Ofatumumab, heavy chain H 222 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.195
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 136.33 α = 90.00
b = 55.94 β = 122.17
c = 79.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-07
  • Released Date: 2009-05-26
  • Deposition author(s): Du, J., Yang, H., Ding, J.

Revision History

  • Version 1_0: 2009-05-26

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance