3GIA

Crystal Structure of ApcT Transporter

Structural Biology Knowledgebase: 3GIA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3GIA

Classification: TRANSPORT PROTEIN

Total Structure Weight: 49347.66

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein MJ0609 A 444 Methanocaldococcus jannaschii Gene Name(s): MJ0609

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Amino Acid/Polyamine/Organocation (APC) Superfamily

Protein Name: apo ApcT Na+-independent Amino Acid Transporter


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BCN
Query on BCN

A BICINE
C6 H13 N O4
FSVCELGFZIQNCK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D10
Query on D10

A DECANE
C10 H22
DIOQZVSQGTUSAI-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.203
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.48 α = 90.00
b = 99.50 β = 117.71
c = 72.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-05
  • Released Date: 2009-08-18
  • Deposition author(s): Shaffer, P.L., Goehring, A.S., Shankaranarayanan, A., Gouaux, E., New York Consortium on Membrane Protein Structure (NYCOMPS)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4