3G6H

Src Thr338Ile inhibited in the DFG-Asp-Out conformation

Structural Biology Knowledgebase: 3G6H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 3G6H

Classification: TRANSFERASE

Total Structure Weight: 66109.48

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene tyrosine-protein kinase Src A, B 286 Gallus gallus EC#: 2.7.10.2 IUBMB
Fragment: Protein kinase Domain
Mutation: T338I
Gene Name(s): SRC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
G6H
Query on G6H

B N-{4-methyl-3-[(3-{4-[(3,4,5-trimethoxyphenyl)amino]- 1,3,5-triazin-2-yl}pyridin-2-yl)amino]phenyl}- 3-(trifluoromethyl)benzamide
C32 H28 F3 N7 O4
SNOVXGXKOHJZJH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
G6H N/A in BindingDB
IC50: 4.6 nM  BindingMOAD
IC50: 6.4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.225
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 41.94 α = 100.99
b = 63.34 β = 89.39
c = 74.18 γ = 90.20

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-02-06
  • Released Date: 2009-03-24
  • Deposition author(s): Seeliger, M.A., Ranjitkar, P., Kasap, C., Shan, Y., Shaw, D.E., Shah, N.P., Kuriyan, J., Maly, D.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4