3G0E

KIT kinase domain in complex with sunitinib


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 3G0E

Classification: TRANSFERASE

Total Structure Weight: 38615.65

Macromolecule Entities
Molecule Chains Length Organism Details
Mast/stem cell growth factor receptor A 336 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: Kinase domain - KID deleted
Gene Name(s): KIT Gene View SCFR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
B49
Query on B49

A N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro- 2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]- 2,4-dimethyl-1H-pyrrole-3-carboxamide
SUNITINIB (Synonym)
C22 H27 F N4 O2
WINHZLLDWRZWRT-ATVHPVEESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
B49 N/A in BindingDB
Kd: 20 nM  BindingMOAD
Kd: 20 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 48.03 α = 90.00
b = 80.97 β = 90.00
c = 93.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-01-27
  • Released Date: 2009-02-24
  • Deposition author(s): Gajiwala, K.S., Wu, J.C., Lunney, E.A., Gemetri, G.D.

Revision History

  • 2011-07-13
    Type: Version format compliance