3FRJ

Crystal Structure of 11b-Hydroxysteroid Dehydrogenase-1 (11b-HSD1) in Complex with Piperidyl Benzamide Inhibitor

Structural Biology Knowledgebase: 3FRJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 3FRJ

Classification: OXIDOREDUCTASE

Total Structure Weight: 65614.52

Macromolecule Entities
Molecule Chains Length Organism Details
Corticosteroid 11-beta-Dehydrogenase, Isozyme 1 A, B 286 Homo sapiens EC#: 1.1.1.146 IUBMB
Mutation: C272S
Gene Name(s): HSD11B1 Gene View HSD11 HSD11L SDR26C1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
A49
Query on A49

B N-{1-[(1-carbamoylcyclopropyl)methyl]piperidin- 4-yl}-N-cyclopropyl-4-[(1S)-2,2,2-trifluoro- 1-hydroxy-1-methylethyl]benzamide
C23 H30 F3 N3 O3
FAVXIEFZKPJZRT-NRFANRHFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
A49 IC50: 14 nM (99) BindingDB

IC50: 167 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.192
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 104.92 α = 90.00
b = 104.92 β = 90.00
c = 134.78 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-01-08
  • Released Date: 2009-06-16
  • Deposition author(s): Wang, Z., Sudom, A., Walker, N.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4