3F7P

Crystal structure of a complex between integrin beta4 and plectin

Structural Biology Knowledgebase: 3F7P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.204

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3F7P

Classification: STRUCTURAL PROTEIN / CELL ADHESION

Total Structure Weight: 149681.24

Macromolecule Entities
Molecule Chains Length Organism Details
Plectin-1 A, B 296 Homo sapiens Fragment: Actin-binding domain, residues 1-293
Gene Name(s): PLEC Gene View PLEC1
Integrin beta-4 C, D, E 248 Homo sapiens EC#: 2.3.2.24 IUBMB
Fragment: Fibronectin type-III, residues 1126-1370
Gene Name(s): ITGB4 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.204
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.25 α = 90.00
b = 107.25 β = 90.00
c = 203.97 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-10
  • Released Date: 2009-03-10
  • Deposition author(s): de Pereda, J.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4