3ETN

Crystal structure of putative phosphosugar isomerase involved in capsule formation (YP_209877.1) from Bacteroides fragilis NCTC 9343 at 1.70 A resolution

Structural Biology Knowledgebase: 3ETN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ETN

Classification: ISOMERASE

Total Structure Weight: 100640.92

Macromolecule Entities
Molecule Chains Length Organism Details
putative phosphosugar isomerase involved in capsule formation A, B, C, D 220 Bacteroides fragilis Gene Name(s): BF9343_0136

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CMK
Query on CMK

A, B, C, D CYTIDINE 5'-MONOPHOSPHATE 3-DEOXY-BETA-D- GULO-OCT-2-ULO-PYRANOSONIC ACID
CMP-2-KETO-3-DEOXY-OCTULOSONIC ACID (Synonym)
C17 H26 N3 O15 P
YWWJKULNWGRYAS-UOVSKDHASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.172
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.41 α = 90.00
b = 114.27 β = 90.00
c = 115.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-08
  • Released Date: 2008-10-21
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2014-11-05
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor