3EFO

Crystal Structure of the mammalian COPII-coat protein Sec23/24 bound to the transport signal sequence of syntaxin 5

Structural Biology Knowledgebase: 3EFO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3EFO

Classification: PROTEIN TRANSPORT

Total Structure Weight: 173751.41

Macromolecule Entities
Molecule Chains Length Organism Details
Protein transport protein Sec23A A 765 Homo sapiens Mutation: K193G
Gene Name(s): SEC23A Gene View
SEC24 related gene family, member D B 770 Homo sapiens Fragment: conserved core, UNP residues 267-1033
Gene Name(s): SEC24D Gene View KIAA0755
Peptide C 7 Homo sapiens Details: Syntaxin 5 transport signal sequence
Gene Name(s): STX5 Gene View STX5A

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.211
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.06 α = 90.00
b = 140.83 β = 90.00
c = 152.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-09
  • Released Date: 2008-10-21
  • Deposition author(s): Goldberg, J., Mancias, J.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4