3EB8

VirA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural and functional studies indicate that Shigella VirA is not a protease and does not directly destabilize microtubules.

Germane, K.L.Ohi, R.Goldberg, M.B.Spiller, B.W.

(2008) Biochemistry 47: 10241-10243

  • DOI: https://doi.org/10.1021/bi801533k
  • Primary Citation of Related Structures:  
    3EB8

  • PubMed Abstract: 

    VirA, an essential virulence factor in Shigella disease pathogenesis, is involved in the uptake, motility, and cell-to-cell spread of Shigella organisms within the human host. These functions have been attributed to a VirA protease activity and a mechanism of microtubule destruction via tubulin degradation [Yoshida, S., et al. (2006) Science 314, 985-989]. We report functional and crystallographic data indicating a novel VirA structure that lacks these activities but highlights the homology to the EspG virulence factor of pathogenic Escherichia coli.


  • Organizational Affiliation

    Department of Pharmacology, Vanderbilt University Medical Center, 461 Preston Research Building, 2220 Pierce Avenue, Nashville, Tennessee 37232, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cysteine protease-like virA
A, B
358Shigella flexneriMutation(s): 0 
Gene Names: virACP0181pWR501_0191
EC: 3.4.22
UniProt
Find proteins for Q7BU69 (Shigella flexneri)
Explore Q7BU69 
Go to UniProtKB:  Q7BU69
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7BU69
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 91.29α = 90
b = 91.29β = 90
c = 198.29γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
SHARPphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-09-30
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.2: 2020-02-26
    Changes: Data collection, Database references
  • Version 1.3: 2024-02-21
    Changes: Data collection, Database references