3DSS

Crystal structure of RabGGTase(DELTA LRR; DELTA IG)

Structural Biology Knowledgebase: 3DSS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.149

Literature

Macromolecules
Sequence Display for 3DSS

Classification: TRANSFERASE

Total Structure Weight: 75479.96

Macromolecule Entities
Molecule Chains Length Organism Details
Geranylgeranyl transferase type-2 subunit alpha A 331 Rattus norvegicus EC#: 2.5.1.60 IUBMB
Fragment: PFTA domains, UNP residues 1-237 and 353-441
Gene Name(s): Rabggta Ggta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Geranylgeranyl transferase type-2 subunit beta B 331 Rattus norvegicus EC#: 2.5.1.60 IUBMB
Gene Name(s): Rabggtb Ggtb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.149
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.75 α = 90.00
b = 90.63 β = 90.00
c = 114.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-14
  • Released Date: 2008-09-09
  • Deposition author(s): Guo, Z., Yu, S., Goody, R.S., Alexandrov, K., Blankenfeldt, W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4