3DRT

Crystal structure of the HIV-1 broadly neutralizing antibody 2F5 in complex with the gp41 scrambledFP-MPER scrHyb3K construct GIGAFGLLGFLAAGSKK-Ahx-K656NEQELLELDKWASLWN671


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 3DRT

Classification: IMMUNE SYSTEM

Total Structure Weight: 52263.79

Macromolecule Entities
Molecule Chains Length Organism Details
2F5 Fab' light chain A 214 Homo sapiens
2F5 Fab' heavy chain B 235 Homo sapiens
scrHyb3K construct C 35 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ACA
Query on ACA
C PEPTIDE LINKING C6 H13 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.203
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 64.20 α = 90.00
b = 76.40 β = 90.00
c = 93.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-11
  • Released Date: 2009-06-23
  • Deposition author(s): Julien, J.-P., Bryson, S., de la Torre, B.G., Andreu, D., Nieva, J.L., Pai, E.F.

Revision History

  • Version 1_0: 2009-06-23

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_2: 2017-02-08

    Type: Other