3DK3

Crystal structure of mutant ABL kinase domain in complex with small molecule fragment

Structural Biology Knowledgebase: 3DK3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3DK3

Classification: TRANSFERASE

Total Structure Weight: 68718.95

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene tyrosine-protein kinase ABL1 A, B 293 Mus musculus EC#: 2.7.10.2 IUBMB
Mutation: Y393F, L445P
Gene Name(s): Abl1 Abl

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
SX7
Query on SX7

A, B 2-amino-5-[3-(1-ethyl-1H-pyrazol-5-yl)-1H- pyrrolo[2,3-b]pyridin-5-yl]-N,N-dimethylbenzamide
2-Amino-5-[3-(2-ethyl-2H-pyrazol-3-yl)-1H- pyrrolo[2,3-b]pyridin-5-yl]-N,N-dimethyl- benzamide (Synonym)
C21 H22 N6 O
INAGORZAOFUKOZ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.213
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 106.25 α = 90.00
b = 131.81 β = 90.00
c = 56.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-24
  • Released Date: 2008-07-29
  • Deposition author(s): Lewis, H.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4