Macromolecules
Sequence Display for 3DH4

Classification: TRANSPORT PROTEIN

Total Structure Weight: 229217.13

Macromolecule Entities
Molecule Chains Length Organism Details
Sodium/glucose cotransporter A, B, C, D 530 Vibrio parahaemolyticus Gene Name(s): sglT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Solute Sodium Symporter (SSS) Family

Protein Name: vSGLT Sodium Galactose Transporter


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GAL
Query on GAL

A, B, C, D BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ER3
Query on ER3

A, D ERBIUM (III) ION
Er
JHFPQYFEJICGKC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
A, B, C, D L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.270
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 83.28 α = 109.70
b = 109.21 β = 92.02
c = 127.58 γ = 102.11

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-16
  • Released Date: 2008-08-05
  • Deposition author(s): Abramson, J., Faham, S., Cascio, D.

Revision History

  • Version 1_0: 2008-08-05

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description