POP-OUT | CLOSE
MyPDB Login - Username: Password:

About: MyPDB stores and automatically runs your favorite queries. Email alerts are sent when matching structures are found.

    MyPDB Login
MyPDB: Login | Register
RCSB PDB Protein Data Bank | Home A Member of the wwPDB

An Information Portal to Biological Macromolecular Structures

As of Tuesday Feb 02, 2010 at 4 PM PST there are 63093 Structures RSS Feed for the Latest Released Structures Help | Latest Released  |  PDB Statistics Help | PDB Statistics
RCSB PDB Protein Data Bank | Home

Print Options: BW Safe Color Safe Print




URL:
 
 
GOLGI MANNOSIDASE II complex with (3R,4R,5R)-3,4-Dihydroxy-5-({[(1R)-2-hydroxy-1 phenylethyl]amino}methyl) methylpyrrolidin-2-one
 
 
DOI:10.2210/pdb3ddg/pdb
3DDG
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 120482.06
     
    Molecule:alpha-mannosidase 2
    Polymer:1Type:polypeptide(L)Length:1045
    Chains:A
    EC#:3.2.1.114 Go to IUBMB EC entry  
    Fragment:Catalytic domain
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Drosophila melanogaster Go to NCBI Taxonomy entry Common Name: Fruit fly Expression System: Drosophila melanogaster  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1HTY  dGMII + Tris 
    1QWN  dGMII + 5fluoro-Gulosylfluoride 
    2ALW  dGMII + Noeuromycin 
    2F18  dGMII + (2R,3R,4S)-2-({[(1R)-2-hydroxy-1-phenylethyl]amino}methyl)pyrrolidine-3,4-diol 
    2F1A  dGMII + (2R,3R,4S)-2-({[(1S)-2-hydroxy-1-phenylethyl]amino}methyl)pyrrolidine-3,4-diol 
    2F1B  dGMII + (2R,3R,4S,5R)-2-({[(1R)-2-hydroxy-1-phenylethyl]amino}methyl)-5-methylpyrrolidine-3,4-diol 
    2F7O  dGMII + Mannostatin A 
    2F7P  dGMII + Benzyl-mannostatin A 
    3BLB  dGMII + swainsonine at 1.3 A 
    3BUB  dGMII empty active site 
    3DDF   
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    GB7     (3R,4R,5R)-3,4-dihydroxy-5-({[(1R)-2-hydroxy- 1-phenylethyl]amino}methyl)-1
    -methylpyrrolidin- 2-one     		C14 H20 N2 O4 3DLigand Explorer Link out to Ligand Expos:GB7 Link out to SuperLigands:GB7 Link out to SuperHapten:GB7
    MRD     (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 3DLigand Explorer Link out to Ligand Expos:MRD Link out to SuperLigands:MRD Link out to SuperHapten:MRD
    NAG     N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 3DLigand Explorer Link out to Ligand Expos:NAG Link out to SuperLigands:NAG Link out to SuperHapten:NAG
    PO4     PHOSPHATE ION O4 P 3DLigand Explorer Link out to Ligand Expos:PO4 Link out to SuperLigands:PO4 Link out to SuperHapten:PO4
    ZN     ZINC ION Zn 3DLigand Explorer Link out to Ligand Expos:ZN Link out to SuperLigands:ZN Link out to SuperHapten:ZN
     
     
  •  
    Move Section Derived Data Hide
     
     
Reset Layout
 
< Biological Assembly    Help
Help | Display Options
Biological assembly assigned by authors and generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Kuntz, D.A.,   Rose, D.R.,   Hoffman, D.

    Deposition:   2008-06-05
    Release:   2008-07-01
    Last Modified (REVDAT):   2008-12-23
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 1.74
    R-Value: 0.166 (obs.)
    R-Free: 0.195
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 69.19 α = 90.00 
    b = 110.08 β = 90.00 
    c = 138.96 γ = 90.00