3D9S

Human Aquaporin 5 (AQP5) - High Resolution X-ray Structure

Structural Biology Knowledgebase: 3D9S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3D9S

Classification: Membrane Protein

Total Structure Weight: 114165.26

Macromolecule Entities
Molecule Chains Length Organism Details
Aquaporin-5 A, B, C, D 266 Homo sapiens Gene Name(s): AQP5 Gene View

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Channels: Aquaporins and Glyceroporins

Protein Name: AQP5 aquaporin water channel (HsAQP5)


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PS6
Query on PS6

D O-[(S)-{[(2S)-2-(hexanoyloxy)-3-(tetradecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]- D-serine
C26 H50 N O10 P
HXSPCZGHXODQMW-XZOQPEGZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.162
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 90.48 α = 90.00
b = 90.64 β = 90.00
c = 184.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-27
  • Released Date: 2008-08-26
  • Deposition author(s): Horsefield, R., Norden, K., Fellert, M., Backmark, A., Tornroth-Horsefield, S., Terwisscha Van Scheltinga, A.C., Kvassman, J., Kjellbom, P., Johanson, U., Neutze, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4