3D85

Crystal structure of IL-23 in complex with neutralizing FAB

Structural Biology Knowledgebase: 3D85 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3D85

Classification: IMMUNE SYSTEM / CYTOKINE

Total Structure Weight: 102028.04

Macromolecule Entities
Molecule Chains Length Organism Details
FAB of antibody 7G10, light chain A 214 Homo sapiens Fragment: light chain
FAB of antibody 7G10, heavy chain B 223 Homo sapiens Fragment: heavy chain
Interleukin-23 subunit p19 C 178 Homo sapiens Fragment: subunit p19
Gene Name(s): IL23A Gene View SGRF UNQ2498/PRO5798
Interleukin-12 subunit p40 D 306 Homo sapiens Fragment: subunit p40
Mutation: N200Q
Gene Name(s): IL12B Gene View NKSF2

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.171
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 75.39 α = 90.00
b = 62.09 β = 97.44
c = 107.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-22
  • Released Date: 2008-09-02
  • Deposition author(s): Beyer, B.M., Ingram, R., Ramanathan, L., Reichert, P., Le, H., Madison, V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4