3D55

Crystal structure of M. tuberculosis YefM antitoxin

Structural Biology Knowledgebase: 3D55 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 3D55

Classification: TOXIN INHIBITOR

Total Structure Weight: 41021.82

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein Rv3357/MT3465 A, B, C, D 91 Mycobacterium tuberculosis Gene Name(s): relJ relB3 yefM Rv3357 MTV004.14
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.180
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 64.85 α = 90.00
b = 64.78 β = 90.00
c = 83.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-15
  • Released Date: 2008-12-02
  • Deposition author(s): Kumar, P., Issac, B., Dodson, E.J., Turkenberg, J.P., Mande, S.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4