3D1P

Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.124
  • R-Value Work: 0.108

Literature

Macromolecules
Sequence Display for 3D1P

Classification: TRANSFERASE

Total Structure Weight: 15714.32

Macromolecule Entities
Molecule Chains Length Organism Details
Putative thiosulfate sulfurtransferase YOR285W A 139 Saccharomyces cerevisiae EC#: 2.8.1.1 IUBMB
Gene Name(s): RDL1 YOR285W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.124
  • R-Value Work: 0.108
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 58.34 α = 90.00
b = 37.43 β = 108.86
c = 52.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-06
  • Released Date: 2008-07-08
  • Deposition author(s): Nocek, B., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance