3D10

Crystal Structure of S100B in the Calcium and Zinc Loaded State at pH 10.0


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 3D10

Classification: METAL BINDING PROTEIN

Total Structure Weight: 21895.38

Macromolecule Entities
Molecule Chains Length Organism Details
Protein S100-B A, B 92 Homo sapiens Gene Name(s): S100B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

B TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.209
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 34.75 α = 90.00
b = 58.18 β = 111.08
c = 47.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-02
  • Released Date: 2009-04-14
  • Deposition author(s): Ostendorp, T., Diez, J., Heizmann, C.W., Fritz, G.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance