3D03

1.9A structure of Glycerophoshphodiesterase (GpdQ) from Enterobacter aerogenes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 3D03

Classification: HYDROLASE

Total Structure Weight: 185343.08

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphohydrolase A, B, C..., D, E, FA, B, C, D, E, F 274 Klebsiella aerogenes EC#: 3.1.4.53 IUBMB
Mutation: E224A, R227D
Gene Name(s): cpdA ph
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO
Query on CO

A, B, C, D, E, F COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.184
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 94.97 α = 90.00
b = 133.84 β = 90.00
c = 168.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-30
  • Released Date: 2008-10-14
  • Deposition author(s): Hadler, K.S., Tanifum, E., Yip, S.H.-C., Miti, N., Guddat, L.W., Jackson, C.J., Gahan, L.R., Carr, P.D., Nguyen, K., Ollis, D.L., Hengge, A.C., Larrabee, J.A., Schenk, G.

Revision History

  • 2011-07-13
    Type: Version format compliance