3CXW

Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and a beta carboline ligand I


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 3CXW

Classification: TRANSFERASE

Total Structure Weight: 37725.25

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase Pim-1, Isoform 2 A 314 Homo sapiens EC#: 2.7.11.1 IUBMB
Mutation: R250G
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Pimtide peptide B 14 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
7CP
Query on 7CP

A (4R)-7,8-dichloro-1',9-dimethyl-1-oxo-1,2,4,9- tetrahydrospiro[beta-carboline-3,4'-piperidine]- 4-carbonitrile
C18 H18 Cl2 N4 O
XGUIMGJMQKZRGM-LLVKDONJSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.164
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 98.37 α = 90.00
b = 98.37 β = 90.00
c = 81.33 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-25
  • Released Date: 2008-07-15
  • Deposition author(s): Filippakopoulos, P., Bullock, A., Fedorov, O., Huber, K., Bracher, F., Pike, A.C.W., Roos, A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2008-07-15

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2012-01-18

    Type: Database references

  • Version 1_3: 2013-06-19

    Type: Database references

  • Version 1_4: 2017-10-25

    Type: Author supporting evidence, Refinement description