3CSF

Crystal structure of PI3K p110gamma catalytical domain in complex with organoruthenium inhibitor DW2

Structural Biology Knowledgebase: 3CSF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.252

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3CSF

Classification: TRANSFERASE

Total Structure Weight: 111224.36

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform A 966 Homo sapiens EC#: 2.7.1.153 IUBMB
Fragment: PI3-KINASE P110 SUBUNIT GAMMA
Gene Name(s): PIK3CG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DW2
Query on DW2

A RU-PYRIDOCARBAZOLE-2
C23 H13 N3 O4 Ru
KERGYDCAYYYADM-UDLLLUGBCD
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.252
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 143.63 α = 90.00
b = 68.08 β = 95.26
c = 106.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-09
  • Released Date: 2008-05-27
  • Deposition author(s): Xie, P., Marmorstein, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4