3C9W

Crystal Structure of ERK-2 with hypothemycin covalently bound

Structural Biology Knowledgebase: 3C9W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3C9W

Classification: TRANSFERASE

Total Structure Weight: 83156.26

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 1 A, B 357 Rattus norvegicus EC#: 2.7.11.24 IUBMB
Gene Name(s): Mapk1 Erk2 Mapk Prkm1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HMY
Query on HMY

A, B (1aR,8S,13S,14S,15aR)-5,13,14-trihydroxy- 3-methoxy-8-methyl-8,9,13,14,15,15a-hexahydro- 6H-oxireno[k][2]benzoxacyclotetradecine-6,12(1aH)- dione
Hypothemycin (Synonym)
C19 H22 O8
SSNQAUBBJYCSMY-LWQPPDATSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.197
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.81 α = 90.00
b = 117.30 β = 89.82
c = 65.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-02-18
  • Released Date: 2008-07-08
  • Deposition author(s): Rosenfeld, R.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4