3C9M

Structure of a mutant bovine rhodopsin in hexagonal crystal form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 3C9M

Classification: SIGNALING PROTEIN

Total Structure Weight: 39558.25

Macromolecule Entities
Molecule Chains Length Organism Details
Rhodopsin A 348 Bos taurus Mutation: N2C, D282C
Gene Name(s): RHO Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: Rhodopsin


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACE
Query on ACE

A ACETYL GROUP
C2 H4 O
IKHGUXGNUITLKF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.174
  • Space Group: P 64

Unit Cell:

Length (Å) Angle (°)
a = 109.30 α = 90.00
b = 109.30 β = 90.00
c = 77.70 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-02-16
  • Released Date: 2008-08-05
  • Deposition author(s): Stenkamp, R.E.

Revision History

  • 2011-07-13
    Type: Non-polymer description, Version format compliance
  • 2011-10-05
    Type: Other