3C6R

Low pH Immature Dengue Virus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 25.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of the immature dengue virus at low pH primes proteolytic maturation

Yu, I.M.Zhang, W.Holdaway, H.A.Li, L.Kostyuchenko, V.A.Chipman, P.R.Kuhn, R.J.Rossmann, M.G.Chen, J.

(2008) Science 319: 1834-1837

  • DOI: https://doi.org/10.1126/science.1153264
  • Primary Citation of Related Structures:  
    3C6R

  • PubMed Abstract: 

    Intracellular cleavage of immature flaviviruses is a critical step in assembly that generates the membrane fusion potential of the E glycoprotein. With cryo-electron microscopy we show that the immature dengue particles undergo a reversible conformational change at low pH that renders them accessible to furin cleavage. At a pH of 6.0, the E proteins are arranged in a herringbone pattern with the pr peptides docked onto the fusion loops, a configuration similar to that of the mature virion. After cleavage, the dissociation of pr is pH-dependent, suggesting that in the acidic environment of the trans-Golgi network pr is retained on the virion to prevent membrane fusion. These results suggest a mechanism by which flaviviruses are processed and stabilized in the host cell secretory pathway.


  • Organizational Affiliation

    Department of Biological Sciences, 915 West State Street, Purdue University, West Lafayette, IN 47907-2054, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope proteinA,
C [auth B],
E [auth C]
395Dengue virus 2 Thailand/PUO-218/1980Mutation(s): 0 
UniProt
Find proteins for P18356 (Dengue virus type 2 (strain Thailand/PUO-218/1980))
Explore P18356 
Go to UniProtKB:  P18356
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18356
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Peptide prB [auth D],
D [auth E],
F
81Dengue virus 2 Thailand/PUO-218/1980Mutation(s): 0 
UniProt
Find proteins for P18356 (Dengue virus type 2 (strain Thailand/PUO-218/1980))
Explore P18356 
Go to UniProtKB:  P18356
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18356
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 25.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONEM3DR

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-04-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2018-07-18
    Changes: Data collection, Source and taxonomy
  • Version 1.3: 2024-02-21
    Changes: Data collection, Database references, Derived calculations