3C0K

Crystal Structure of a ribosomal RNA methyltranferase

Structural Biology Knowledgebase: 3C0K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3C0K

Classification: TRANSFERASE

Total Structure Weight: 89764.53

Macromolecule Entities
Molecule Chains Length Organism Details
UPF0064 protein yccW A, B 396 Escherichia coli EC#: 2.1.1 IUBMB
Gene Name(s): rlmI yccW b0967 JW5898
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.194
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.31 α = 90.00
b = 80.88 β = 98.91
c = 66.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-21
  • Released Date: 2008-11-04
  • Deposition author(s): Subramanian, S., Jayaraman, S., Bujnicki, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4