3BPT

Crystal structure of human beta-hydroxyisobutyryl-CoA hydrolase in complex with quercetin

Structural Biology Knowledgebase: 3BPT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.147

Literature

Macromolecules
Sequence Display for 3BPT

Classification: HYDROLASE

Total Structure Weight: 41485.27

Macromolecule Entities
Molecule Chains Length Organism Details
3-hydroxyisobutyryl-CoA hydrolase A 363 Homo sapiens EC#: 3.1.2.4 IUBMB
Fragment: Residues 32-386
Mutation: E41G
Gene Name(s): HIBCH Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
QUE
Query on QUE

A 3,5,7,3',4'-PENTAHYDROXYFLAVONE
QUERCETIN (Synonym)
C15 H10 O7
REFJWTPEDVJJIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HIU
Query on HIU

A (2R)-3-HYDROXY-2-METHYLPROPANOIC ACID
3-HYDROXYISOBUTYRATE (Synonym)
C4 H8 O3
DBXBTMSZEOQQDU-GSVOUGTGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.147
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.10 α = 90.00
b = 76.64 β = 108.24
c = 55.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-19
  • Released Date: 2008-01-08
  • Deposition author(s): Pilka, E.S., Phillips, C., King, O.N.F., Guo, K., von Delft, F., Pike, A.C.W., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4