3BNG

W. succinogenes NrfA Y218F


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 3BNG

Classification: OXIDOREDUCTASE

Total Structure Weight: 59175.00

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c-552 A 485 Wolinella succinogenes EC#: 1.7.2.2 IUBMB
Mutation: Y218F
Gene Name(s): nrfA WS0969
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Y1
Query on Y1

A YTTRIUM ION
Y
KAJPZYFHSCFBCI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.181
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 120.03 α = 90.00
b = 120.03 β = 90.00
c = 186.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-14
  • Released Date: 2008-02-26
  • Deposition author(s): Lukat, P., Einsle, O.

Revision History

  • Version 1_0: 2008-02-26

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance