3BJT

Pyruvate kinase M2 is a phosphotyrosine binding protein

Structural Biology Knowledgebase: 3BJT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3BJT

Classification: TRANSFERASE

Total Structure Weight: 231898.10

Macromolecule Entities
Molecule Chains Length Organism Details
Pyruvate kinase isozymes M1/M2 A, B, C, D 530 Homo sapiens EC#: 2.7.1.40 IUBMB
Mutation: H379N
Gene Name(s): PKM Gene View OIP3 PK2 PK3 PKM2

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OXL
Query on OXL

A, B, C, D OXALATE ION
C2 O4
MUBZPKHOEPUJKR-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.211
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 74.63 α = 69.82
b = 80.71 β = 77.74
c = 107.60 γ = 67.97

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-04
  • Released Date: 2008-03-04
  • Deposition author(s): Wu, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4