3B8A

Crystal structure of yeast hexokinase PI in complex with glucose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 3B8A

Classification: TRANSFERASE

Total Structure Weight: 54081.05

Macromolecule Entities
Molecule Chains Length Organism Details
Hexokinase-1 X 485 Saccharomyces cerevisiae EC#: 2.7.1.1 IUBMB
Gene Name(s): HXK1 HKA YFR053C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BGC
Query on BGC

X BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

X SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.192
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 62.12 α = 90.00
b = 78.87 β = 90.00
c = 144.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-31
  • Released Date: 2008-02-26
  • Deposition author(s): Kuser, P., Cupri, F., Bleicher, L., Polikarpov, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4